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Ages of Y-STR variation within Y-chromosome haplogroups in East Asia

Источник: Extended Y-chromosome investigation suggests post-Glacial migrations of modern humans into East Asia via the northern route. Zhong 2010

Haplogroup    Age ± SE in kya (n)

F2-M427 [a] 	2.42 ± 1.96 (15) 
G1-M285 [b] 	14.79 ± 4.77 (7) 
G2a-P15 [b] 	14.58 ± 2.90 (66) 
H1-M52 [b] 	9.68 ± 2.07 (167)
J1-M267 [b] 	23.11 ± 11.34 (344) 
J2a-M410 [b] 	17.83 ± 4.63 (176)
J2a1-M322 [b] 	5.18 ± 2.42 (7) 
J2a2-M67 [b] 	12.89 ± 2.39 (52) 
J2a8-M319 [b] 	8.05 ± 4.44 (18) 
J2b-M12 [b] 	12.14 ± 2.58 (69) 
J2b2-M241 [b] 	13.86 ± 3.15 (49) 
L2-M317 [b] 	12.45 ± 2.47 (6) 
L3-M357 [b] 	7.93 ± 2.43 (24) 
Q1a1-M120 [a] 	15.42 ± 7.25 (61) 
Q1a2-M25 [b] 	2.72 ± 1.24 (5) 
Q1a3a*-M346 [b] 	17.77 ± 4.41 (13) 
R1a1*-M17 [a] 	15.37 ± 3.46 (84) 
R1b-M343 [b] 	17.35 ± 4.53 (338)
R2-M124 [b] 	11.73 ± 1.67 (100) 
T-M70 [b] 	15.40 ± 1.35 (14) 
C1-M8 [a] 	9.96 ± 3.54 (20) 
C3*-M217 [a] 	18.78 ± 4.19 (374)
C3c-M48 [a] 	9.31 ± 2.85 (18) 
C3d-M407 [a] 	9.47 ± 2.71 (22) 
C3e-P53.1 [a] 	4.83 ± 2.34 (15) 
D*-M174 [e] 	50.62 ± 16.60 (44)
D1-M15 [a] 	32.67 ± 6.28 (233) 
D2-M57 [a] 	16.27 ± 3.33 (106)
D3-P47 [a] 	12.97 ± 3.35 (282) 
O1a*-M119 [f] 	35.05 ± 4.58 (346)
O1a2-M110 [f] 	39.93 ± 11.55 (21) 
O2a*-M95 [f] 	41.10 ± 7.61 (343)
O3*-M122 [a] 	37.24 ± 4.56 (27) 
O3a*-M324 [a] 	39.29 ± 5.03 (355)
O3a3b-M7 [a] 	41.74 ± 7.00 (88) 
O3a3c1*-M133 [a]	29.23 ± 5.47 (242)
O3a3c-M134 [a]	35.32 ± 4.66 (139)


[a] including East Asians only; [b] including individuals from East Asia, CSA and WE;
[e] including East Asians and Andamanese; [f] including East and Southeast Asians.
The numbers (n) in brackets are sample size.

Age of Microsatellite Variations within Various Y HGs in India

Источник: Polarity and Temporality of High-Resolution Y-Chromosome Distributions in India Identify Both Indigenous and Exogenous Expansions and Reveal Minor Genetic Influence of Central Asian Pastoralists. Sengupta 2006

                          AGE In KYA ± SD (n) OF MICROSATELLITE VARIATION

                            |Austro-Asiatic|Tibeto-Burman|         Dravidian        |            Indo-European             |
|     HG     |    Pooled    |    Tribe     |    Tribe    |    Tribe    |    Caste   |   Tribe   |    Caste    |   Muslim   |
 C5-M356	19.4±4.2 (11)						                                   24.6±8.0 (5)	
 F*-M89	        28.9±4.4 (38)			                26.7±5.7 (25)	28.1±5.3 (8)			
 G2-P15	        10.5±3.9 (9)				                        8.6±3.7 (8)			
 H1-M52	        10.6±1.8 (145)	  9.7±4.4 (9)                   9.8±2.0 (64)	12.6±3.8 (25) 10.9±3.6 (5) 10.0±2.1 (40)	
 H2-Apt	        17.8±4.3 (16)			                11.3±6.4 (9)				
 H-M69*	        30.4±7.7 (29)	  8.0±4.0 (5)			                20.9±9.5 (13)		   30.6±12.5 (9)	
 J2*-M410/M158	13.7±2.9 (28)			                		15.8±5.3 (12)		   12.4±2.0 (12)	
 J2b2-M241	13.8±3.8 (38)	  3.6±1.7 (7)	            		        12.1±3.4 (21)		   12.0±3.1 (9)	
 L1-M76	        9.1±1.9 (46)			                6.0±2.4 (10)	7.1±2.1 (30)		   13.6±4.3 (6)	
 O2a-M95[b]	11.7±1.6 (106)	  8.8±2.0 (34)	12.9±3.1 (16)	8.2±1.9 (48)	   	       8.5±3.8 (6)		
 O3e-M134[c]	9.2±2.7 (58)		        9.3±2.7 (57)					
 R1a1-M17[d]	14.0±3.1 (114)			                10.9±3.8 (5)	12.2±3.0 (34)		   14.6±3.5 (57)    10.5±3.0 (11)
 R2-M124	11.6±2.1 (68)	  9.8±2.4 (7)	10.1±4.3 (5)	18.1±4.6 (9)	8.9±2.3 (13)		   12.7±3.5 (28)    8.5±4.8 (6)


[b] In Cambodia, 11.9±3.5 (np 7); in China, 17.9±5.5 (np 14).
[c] In the Tibeto-Burman tribe, excluding Mizo, 6.7±2.1 (np 44); in Mizo, 15.1±7.0 (np 13); in Southeast Asia, 26.27.0 (np 27).
[d] In Pakistan, 15.6±3.0 (np 50); in Oman, 12.5±2.9 (np 11); in western Eurasia, 12.8±2.5 (np 16); in Greece, 9.3±2.8 (np 19);
in Turkey, 10.0±2.6 (np 36); in Central Asia, 11.2±5.0 (np 10).

Chronological development of haplogroups in Europe

Источник: Human Y-chromosome DNA haplogroup

Haplogroup	Possible time of origin y. a.	Possible place of origin
K	40,000	South Asia or West Asia
T	30,000	West Asia
J	30,000	Middle East
R	28,000	Central Asia
E1b1b-M35	26,000	East Africa
I	25,000	Balkans
R1a1	21,000	Southern Russia
R1b	20,000	Around the Caspian Sea or Central Asia
E1b1b-M78	18,000	Egypt/Libya
G	17,000	Between India and the Caucasus
I2	17,000	Balkans
J2	15,000	Northern Mesopotamia
I2b	13,000	Central Europe
N1c1	12,000	Siberia
I2a	11,000	Balkans
R1b1b2	10,000	North or south of the Caucasus
J1	10,000	Arabian peninsula
E1b1b-V13	10,000	Balkans
I2b1	9,000	Central Europe
I2a1	8,000	Pyrenees
I2a2	7,500	Dinaric Alps
E1b1b-M81	5,500	Maghreb
I1	5,000	Scandinavia
R1b-L21	4,000	Central or Eastern Europe
R1b-S28	3,500	around the Alps
R1b-S21	3,000	Frisia or Central Europe
I2b1a	< 3,000	Britain

Ages of E: M78, V12, V32, M224, V13, V36, V27, V65, V22, M148, V19

Источник: Tracing Past Human Male Movements in Northern/Eastern Africa and Western Eurasia: New Clues from Y-Chromosomal Haplogroups E-M78 and J-M12. Cruciani 2007

Ages of E: M33, M75, M35, M78, M81, M123

Источник: Origin, Diffusion, and Differentiation of Y-Chromosome Haplogroups E and J: Inferences on the Neolithization of Europe and Later Migratory Events in the Mediterranean Area. Semino 2004

Ages of J: M267, M172, M102, M67, M92

Источник: Origin, Diffusion, and Differentiation of Y-Chromosome Haplogroups E and J: Inferences on the Neolithization of Europe and Later Migratory Events in the Mediterranean Area. Semino 2004

Age Estimates and Divergence Times of Haplogroup I Subclades

Источник: Phylogeography of Y-Chromosome Haplogroup I Reveals Distinct Domains of Prehistoric Gene Flow in Europe. Rootsi 2004

AGE ESTIMATE OR DIVERGENCE TIME		  HAPLOGROUP I SUBCLADE	
                 	                      I*	     I1a	    I1b*	   I1b2		   I1c
Time since subclade divergence [a]	      …	        15.9 ± 5.2[b]	10.7 ± 4.8[b]	9.3 ± 7.6c	14.6 ± 3.8[b]
Age of STR variation [d]	                 24.0 ± 7.1	8.8 ± 3.2	7.6 ± 2.7	8.0 ± 4.0	13.2 ± 2.7
Time since population divergence [e]	 23.0 ± 7.7[f]	6.8 ± 1.9[g]	7.1 ± 2.5	7.9 ± 3.6[h]	11.2 ± 2.3[i]


[a] The times, in thousands of years, when the subclades I1a, I1b*, and I1c diverged from I*, as well as when I1b2
diverged from I1b*, were estimated by using the TD estimator: TD p (D1  2V0)/2w (Zhivotovsky et al. 2001, 2004).
Here, D1 is the average squared difference between two alleles sampled from two populations; V0 is the
within-population variance in the number of repeats in the ancestral population prior to its subdivision, estimated
as a half square difference between the allele repeat scores at the founder haplotypes; and w is the effective
mutation rate of 0.00069 per locus per 25 years (Zhivotovsky et al. 2004).
[b] Divergence from I*.
[c] Divergence from I1b*.
[d] The age of STR variation of a subclade was estimated as the average squared difference in the number of repeats
between all sampled chromosomes and the founder haplotype, divided by w. Ages of STR variation within clades I and
I1b were estimated by using I* and I1b* Y chromosomes, respectively. This makes them statistically independent from
the STR variation of their subclades, although they could be still biased because of uncertainties
on founder haplotypes.
[e] The age of population expansion (divergence), estimated with TD, letting V0 p 0, gives its upper bound.
Time since population divergence was analyzed only in populations with a sample size of at least five
individuals; the estimates give an upper bound for the time of population expansion (divergence).
[f] Since all populations, except the Turks, were represented within I* by fewer than five individuals each, only
two samples were compared: Turks versus “Others.”
[g] Obtained by comparing Croat, Czech, Estonian, French, Hungarian, Norwegian, Saami, Swedish, Swiss, Turkish,
and Ukrainian populations.
[h] Since all populations, except the Sardinians, were represented within I1b2 by fewer than five individuals
each, only two samples were compared: Sardinians versus “Others.”
[i] Because of the small sample size for each separate population, we used five combined samples—namely,
southern European (Albanian, Calabrian, central Italian, Sardinian, southern French), northern European
(Norwegian, Swedish, Estonian, Dutch), eastern/central European (Hungarian, Croat, Czech, Slovakian),
western/central European (French–Low Normandy, French-Lyon, northern Italian, Swiss), and southern/eastern
European (Gagauz, Turkish, Ukrainian).

Ages of P303-β, P303-α, P18-α, P18-β, R1b1b2-β, P18-γ, M67-β, M67-γ, M67-α, M67-δ, L3, Q-α, M267(xP58)α, M267(xP58)β, M267(xP58)γ, R1a1a*-α, R1b1b2-α, P15*-α

Источник: Parallel Evolution of Genes and Languages in the Caucasus Region. Balanovsky 2011

Ages of of haplogroup G and subclades

Источник: Distinguishing the co-ancestries of haplogroup G Y-chromosomes in the populations of Europe and the Caucasus. Rootsi 2012

					Median haplotypes by population										Era
G	Population	N	TD	SE	D19	D388	D389I	D389b	D390	D391	D392	D393	D439	A7.2
M285	Caucasus	11	15,810	4,653	16	12	13	17	23	10	12	13	12	11
	Total	28	19,975	5,642	14,5	12	12	16	23	10	12	13	11	11	LGM1 Refugia
M285*	Caucasus	8	14,040	3,601	16	12	13	16,5	23	10	12	13	12	11
	Total	20	20,265	6,342	15	12	12	16	23	10	12	13	11	11
P20	Total	8	15,851	6,624	14	12	12	16	23,5	10	12	13	11	12	Epipaleolithic Expansion
P287	Balkan	12	15,783	2,170	15	13	12	17	22	10	11	14	12	10
	Caucasus	215	14,049	2,450	15	12	12	17	22	10	11	14	11	11
	Crete	5	6,522	3,140	15	12	12	17	22	10	11	14	11	10
	Corsica	71	14,619	2,219	15	12	13	17	22	11	11	14	12	11
	Druze	35	4,765	1,922	15	12	12	17	22	11	11	13	12	10
	Eastern Europe	42	13,278	1,834	15	12	12	17	22	10	11	14	11	10
	Germany	15	13,147	2,293	15	13	12	17	22	10	11	14	11	10
	Greece	10	11,594	2,743	15	12	12	17	22	10	11	14	11	10
	Iran	28	12,434	2,282	15	12	12	17	22	10	11	14	12	10
	Italy	25	12,899	3,446	15	12	12	17	22	10	11	14	11	10
	Ashkenazi Jews	39	2,994	1,081	15	12	14	18	23	10	11	13	11	na
	Sephardic Jews	23	14,585	3,015	15	12	12	17	22	10	11	14	11	10
	Pakistan	10	15,761	5,146	16	12	12	16,5	23	10	11	13,5	11	10,5
	Palestine	19	5,191	1,783	15	12	12	17	22	11	11	14	12	10
	Russia	5	16,667	5,721	15	12	12	17	23	10	11	14	11	11
	Switzerland	14	14,134	2,937	15	13	12	17	22	10	11	14	11	10
	Turkey	59	16,089	2,848	15	12	12	17	22	10	11	14	11	10
	Afghanistan	12	2,114	1,277	16	12	13	17	23	11	11	13	11	11
	Total	674	16,356	2,264	15	12	12	17	22	10	11	14	11	11	LGM Refugia-Turkey/Pakistan/?Caspian Expansion
P15	Balkan	12	15,783	2,170	15	13	12	17	22	10	11	14	12	10
	Caucasus	215	14,049	2,450	15	12	12	17	22	10	11	14	11	11
	Crete	5	6,522	3,140	15	12	12	17	22	10	11	14	11	10
	Corsica	71	14,619	2,219	15	12	13	17	22	11	11	14	12	11
	Druze	35	4,765	1,922	15	12	12	17	22	11	11	13	12	10
	Eastern Europe	41	12,956	1,732	15	12	12	17	22	10	11	14	11	10
	Germany	15	13,147	2,293	15	13	12	17	22	10	11	14	11	10
	Greece	10	11,594	2,743	15	12	12	17	22	10	11	14	11	10
	Iran	28	12,434	2,282	15	12	12	17	22	10	11	14	12	10
	Italy	25	12,899	3,446	15	12	12	17	22	10	11	14	11	10
	Ashkenazi Jews	9	6,710	2,511	15	12	14	18	23	10	11	13	11	na
	Sephardic Jews	23	14,585	3,015	15	12	12	17	22	10	11	14	11	10
	Pakistan	10	15,761	5,146	16	12	12	16,5	23	10	11	13,5	11	10,5
	Palestine	19	5,191	1,783	15	12	12	17	22	11	11	14	12	10
	Russia	5	16,667	5,721	15	12	12	17	23	10	11	14	11	11
	Switzerland	12	9,223	2,329	15	13	12	17	22	10	11	14	11	10
	Turkey	58	15,992	2,861	15	12	12	17	22	10	11	14	11	10
	Total	628	15,983	2,219	15	12	12	17	22	10	11	14	11	10	LGM Refugia-Turkey/Pakistan/?Caspian Expansion
P15*	Caucasus	5	16,848	3,542	15	12	12	17	23	10	11	14	11	11
	Corsica	5	6,441	3,066	na	13	13	17	23	10	11	13	12	11
	Eastern Europe	5	9,903	3,065	15	13	13	16	22	10	11	13	11	11
	Turkey	8	10,417	2,031	15	13	13	17	22	10	11	13	11	11
	Total	38	15,487	2,426	15	12,5	13	17	22	10	11	13	11	11
L91	Corsica	37	6,528	2,171	na	12	14	16	22	11	11	14	12	11	Late Neolithic Expansion to Corsica
	Total	48	10,903	2,523	na	12	14	16	22	11	11	14	12	11	Mesolithic Expansion to Central Mediterranean
P16	Caucasus	97	9,609	2,411	15	12	12	17	22	10	10	14	11	11
	Eastern Europe	5	7,246	2,646	15	12	12	17	22	10	10	14	11	11
	Turkey	9	7,649	1,940	15	12	12	17	22	10	10	14	12	11
	Total	120	9,519	2,130	15	12	12	17	22	10	10	14	12	11	Mesolithic Expansion in Caucasus
M485	Balkan	8	8,152	1,886	15	13	12	17	22	10	11	13,5	12	10
	Caucasus	111	13,130	3,830	15	12	12	17	23	10	11	14	11	11
	Crete	5	6,522	3,140	15	12	12	17	22	10	11	14	11	10
	Corsica	26	9,582	1,858	15	13	12	17	22	10	11	14	11	10
	Druze	34	4,049	1,831	15	12	12	17	22	11	11	13	12	10
	Eastern Europe	30	10,386	1,949	15	12	12	17	22	10	11	14	11	10
	Germany	14	11,905	2,536	15	13	12	17	22	10	11	14	11	10
	Greece	9	12,077	2,940	15	12	12	17	22	10	11	14	11	10
	Iran	20	8,696	2,336	15	12	12	16,5	22	10	11	14	12	10
	Italy	23	11,972	3,213	15	12	12	17	22	10	11	14	11	10
	Sephardic Jews	17	8,325	2,297	15	12	12	17	22	10	11	14	11	10
	Pakistan	6	10,870	4,746	16	12	12	16	23	10	11	14	11	9
	Palestine	19	5,191	1,783	15	12	12	17	22	11	11	14	12	10
	Switzerland	12	9,223	2,329	15	13	12	17	22	10	11	14	11	10
	Turkey	40	15,580	4,414	15	12	12	16	21	10	11	14	11	10
	Total	404	12,698	2,201	15	12	12	17	22	10	11	14	11	10	Post-LGM expansion in Turkey to Mesolithic in Europe
M485*	Total	11	10,540	3,098	15	12	12	17	22	10	11	14	11	10
P303	Balkan	7	7,246	1,921	15	13	12	17	22	10	11	14	12	10
	Caucasus	94	10,650	3,177	15	12	12	17	23	10	11	14	11	11
	Crete	5	6,522	3,140	15	12	12	17	22	10	11	14	11	10
	Corsica	25	9,529	1,808	15	13	12	17	22	10	11	14	11	10
	Druze	9	4,831	2,460	15	12	13	16	22	11	11	13	12	10
	Eastern Europe	24	10,568	2,013	15	12	12	17	22	10	11	14	11	10
	Germany	12	11,775	2,564	15	13	12	17	22	10	11	14	11	10
	Greece	6	9,058	3,246	15	12	12	17	22,5	10	11	14	12	10,5
	Iran	13	6,689	2,568	15	12	12	16	22	10	11	14	12	10
	Italy	14	9,576	2,043	15	13	12	17	22	10	11	14	12	10
	Pakistan	5	14,493	7,001	16	12	12	16	23	10	11	14	11	9
	Turkey	15	10,386	3,056	15	12	12	17	22	10	11	14	11	11
	Switzerland	10	6,240	2,483	15	13	12	17	22	10	11	14	11	10
	Total	301	12,545	2,269	15	12	12	17	22	10	11	14	11	10
P303*	Caucasus	13	13,099	4,495	15	12	12	17	22	10	11	14	12	10
	Corsica	7	10,352	3,619	15	12	12	17	22	11	11	13	11	10
	Druze	6	0,604	0,604	15	12	13	16	22	11	11	13	12	10
	Eastern Europe	7	12,422	3,635	15	12	12	17	22	10	11	14	11	10
	Iran	5	7,971	3,655	15	12	12	16	23	10	11	14	12	10
	Sephardic Jews	11	7,576	2,646	15	12	12	16	22	10	11	14	11	10
	Turkey	9	8,857	3,833	15	12	12	17	22	10	11	14	11	11
	Total	77	12,133	2,748	15	12	12	17	22	10	11	14	11	10
L497	Balkan	7	7,246	1,921	15	13	12	17	22	10	11	14	12	10
	Corsica	17	6,674	2,073	15	13	12	17	22	10	11	14	11	10
	Eastern Europe	5	5,797	1,808	15	13	12	17	22	10	11	14	11	10
	Germany	11	10,870	3,029	15	13	12	17	22	10	11	14	11	10
	Italy	8	6,341	2,259	15	13	12	17	22	10	11	14	11,5	10
	Switzerland	8	4,658	1,698	15	13	12	17	22	10	11	14	11	10
	Total	63	7,493	1,555	15	13	12	17	22	10	11	14	11	10	Expansion in Europe during initial Neolithic eg LBK
U1*	Caucasus	86	10,195	3,148	15	12	12	17	23	10	11	14	11	11
	Eastern Europe	8	5,435	1,761	15	12	12	17	23	10	11	14	11	10
	Palestine	13	3,066	1,406	15	12	12	17	22	11	11	14	12	10
	Turkey	8	7,699	2,531	15	12	12	17	22,5	10	11	14	11	10,5
	Total	125	10,580	2,856	15	12	12	17	23	10	11	14	11	11	Mesolithic Expansion in Caucasus
M527	Iran	6	4,831	2,514	15	12	12	16	22	10	11	14	12	10
	Total	33	7,246	2,373	15	12	12	17	22	10	11	14	12	10	Aegean Early Neolithic Expansion
M406	Caucasus	17	9,165	3,194	16	12	12	16	21	10	11	14	11	10
	Druze	25	1,884	1,434	15	12	12	17	22	11	11	13	11	10
	Iran	7	8,799	1,898	15	12	12	17	21	10	11	14	11	10
	Italy	9	8,052	2,546	15	12	12	17	21	10	11	14	11	10
	Turkey	23	12,760	4,844	15	12	12	16	21	10	11	14	11	10
	Total	103	11,971	2,579	15	12	12	17	21	10	11	14	11	10	Epipaleolithic Expansion in Turkey to Early Neolithic in Italy
M406*	Caucasus	11	10,211	4,062	16	12	12	17	21	10	11	14	11	10
	Druze	25	1,884	1,434	15	12	12	17	22	11	11	13	11	10
	Iran	6	8,152	1,562	15	12	12	17	21	10	11	14,5	11	10
	Italy	7	8,799	2,787	15	12	12	17	21	10	11	14	11	10
	Turkey	14	10,870	3,854	15	12	12	16	21	10	11	15	12	10
	Total	81	12,356	3,192	15	12	12	17	21	10	11	14	11	10
Page19	Caucasus	6	4,227	2,390	16	12	12	16	21	10	11	14	11	10
	Turkey	9	7,649	3,956	15	12	12	16	21	10	11	14	11	10
	Total	22	6,917	2,525	16	12	12	16	21	10	11	14	11	10
M377	Ashkenazi Jews	38	2,013	0,919	15	12	14	18	23	10	11	13	11	na
	Afghanistan	12	2,114	1,277	16	12	13	17	23	11	11	13	11	11
	Total	60	5,625	2,166	15	12	14	18	23	10	11	13	11	11	Early Bronze Age Expansion
na - DYS 19 locus is excluded from analysis because of duplication (Capelli et al. 2007)
LGM1 - Last Glacial Maximum

Egypt and Oman Y Chromosome Haplogroup Variance and Expansion Times Based on 10 STR Loci. E3b-M35, E3b1-M78, E3b2-M81, E3b3-M123, G-M201, J-12f2, J*-12f2d, J2-M172, K2-M70, E3b3-M123, R1a1-M17

Источник: The Levant versus the Horn of Africa: Evidence for Bidirectional Corridors of Human Migrations. Luis 2004

Y IN CZECHS. I-M170, I1-M2531, I2a-P371, I2b1-M2231, P-DYS257*(xR1a), R1a-SRY10831

Источник: Y-Chromosomal Variation in the Czech Republic. Luca 2006

TMRCA of 11 major clades on the Y chromosome haplogroup tree. CT, CF, DE, E, E1b1, F, IJ, I, K, P, R, R1

Источник: New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Karafet 2008

Estimates of age of haplogroup J, J sub-haplogroups

Источник: Y chromosomal haplogroup J as a signature of the post-neolithic colonization of Europe. Giacomo 2004

Caucasian ages of G2a3b1-P303, G2a1a-P18, J2a4b*-M67(xM92), J1*-M267(xP58)

Источник: Balanovsky 2011. Supplementary Table 1. Лист Table S3

Coalescent times and median haplotypes for 11 R1b haplogroups

Источник: A major Y-chromosome haplogroup R1b Holocene era founder effect in Central and Western Europe. Myres 2010. Supplementary Table S2

Table S2: Coalescent times and median haplotypes for 11 R1b haplogroups
						Median haplotypes by population
R1b Haplogroup	Population	N	TD	SE	Avg Var	D19	D388	D389I	D389II	D390	D391	D392	D393	D439	A7.2
M269*	Romania	5	7,246	2,415	0,190	15	12	13	16	25	11	13	12	12	10
	Turkey	10	9,058	2,370	0,228	14	12	13	16	24	11	13	12	11	10
	Total	31	11,173	2,386	0,251	14	12	13	16	25	11	13	12	12	10
L23*	Greece	15	6,763	1,864	0,150	14	12	13	16	24	11	13	12	12	10
	Slovakia	10	5,153	1,362	0,122	14	12	13	16	24	11	13	12	12	10
	Switzerland	10	7,246	1,871	0,151	14	12	13	15	24	11	14	12	12	10
	Hungary	7	5,952	1,812	0,171	14	12	13	17	24	11	13	12	12	10
	Romania	12	11,199	2,003	0,264	14	12	13	16	24	11	13	12	12	10
	Caucasus	32	12,217	2,301	0,292	14	12	13	16	24	11	13	12	12	10
	Bashkir	29	1,624	0,746	0,046	14	12	13	17	24	10	13	12	12	10
	Pakistan	5	14,493	3,241	0,410	14	12	13	16	24	11	13	12	12	10
	Turkey	58	11,057	1,953	0,277	14	12	13	16	24	11	13	12	12	10
	Italy	14	9,526	1,598	0,253	14	12	13	16	24	11	13	12	12,5	10
	Poland	7	3,106	1,144	0,081	14	12	13	17	24	11	13	12	12	10
	Total	214	10,093	1,783	0,248	14	12	13	16	24	11	13	12	12	10
M412*	Total	14	5,694	1,534	0,149	14	12	13	16	24	11	13	13	12	10
L11*	Germany	6	9,481	3,926	0,247	14	12	13	16	24	10	13	13	12,5	11
	Total	23	10,870	2,763	0,291	14	12	13	16	24	11	13	13	12	11
U106 all	Denmark	20	6,789	1,657	0,161	14	12	13	16	23	11	13	13	12	11
	Estonia	10	12,862	4,408	0,352	14	12	13	16	24	10,5	13	13	12	11
	England	26	7,037	1,794	0,179	14	12	13	16	23,5	11	13	13	12	11
	France	6	6,703	1,898	0,200	14	12	13	16	23,5	11	13	13	11	11
	Germany	66	8,480	2,111	0,203	14	12	13	16	23	11	13	13	12	11
	Ireland	6	8,756	2,226	0,243	14	12	13	16	23,5	11	13	13	12	11
	Italy	10	8,333	2,357	0,226	14	12	13	16	23	11	13	13	12	11
	Netherlands	30	7,005	1,987	0,177	14	12	13	16	23	11	13	13	12	11
	Poland	9	10,467	1,820	0,278	14	12	13	16	23	11	13	13	12	11
	Slovakia	11	9,552	3,488	0,249	14	12	13	16	24	11	13	13	12	11
	Switzerland	19	8,963	2,575	0,228	14	12	13	16	24	11	13	13	12	11
	Total	239	8,911	2,300	0,213	14	12	13	16	23	11	13	13	12	11
U106*	Slovakia	11	9,552	3,488	0,249	14	12	13	16	24	11	13	13	12	11
	France	6	6,703	1,898	0,200	14	12	13	16	23,5	11	13	13	11	11
	Estonia	10	12,862	4,408	0,352	14	12	13	16	24	10,5	13	13	12	11
	Switzerland	19	8,963	2,575	0,228	14	12	13	16	24	11	13	13	12	11
	Denmark	19	6,055	1,374	0,162	14	12	13	16	23,5	11	13	13	12	11
	England	23	7,089	2,304	0,171	14	12	13	16	24	11	13	13	12	11
	Germany	61	8,761	2,282	0,204	14	12	13	16	23	11	13	13	12	11
	Ireland	6	8,756	2,226	0,243	14	12	13	16	23,5	11	13	13	12	11
	Italy	10	8,333	2,357	0,226	14	12	13	16	23	11	13	13	12	11
	Netherlands	28	7,246	2,052	0,000	14	12	13	16	23	11	13	13	12	11
	Poland	9	10,467	1,820	0,278	14	12	13	16	23	11	13	13	12	11
	Total	228	9,056	2,416	0,215	14	12	13	16	23	11	13	13	12	11
U198	Germany	5	5,072	1,887	0,140	14	12	13	16	23	11	13	13	12	11
	Total	11	5,929	1,537	0,155	14	12	13	16	23	11	13	13	12	11
S116 all	Bashkir	8	All same hapotype			15	12	13	17	24	11	13	13	12	11
	Denmark	16	7,382	2,644	0,167	14	12	13	16	24	11	13	13	12	11
	England	43	8,962	1,491	0,233	14	12	13	16	24	11	13	13	12	11
	France	40	10,097	2,081	0,268	14	12	13	16	24	11	13	13	12	11
	Vaucluse	20	11,270	3,289	0,307	14	12	13	16	24	11	13	13	12	11
	Germany	62	10,245	1,726	0,262	14	12	13	16	24	11	13	13	12	11
	Greece	7	6,729	2,321	0,162	14	12	13	16	24	11	13	13	13	11
	Hungary	9	9,259	2,753	0,256	14	12	13	16	24	11	13	13	12	11
	Ireland	73	8,152	1,910	0,208	14	12	13	16	24	11	13	13	12	11
	Italy	72	7,637	1,310	0,198	14	12	13	16	24	11	13	13	12	11
	Netherlands	14	7,565	1,659	0,196	14	12	13	16	24	11	13	13	12	11
	Poland	6	9,058	2,738	0,270	14	12	13	16	24	10	13	13	12	11
	Romania	11	7,576	3,296	0,169	14	12	13	16	24	11	13	13	12	11
	Slovakia	20	8,152	2,717	0,224	14	12	13	16	24	11	13	13	12	11
	Slovenia	7	9,317	2,289	0,267	14	12	13	16	24	11	13	13	12	11
	Sweden	10	6,159	1,625	0,172	14	12	13	16	24	11	13	13	12	11
	Switzerland	48	8,610	1,837	0,231	14	12	13	16	24	11	13	13	12	11
	Turkey	5	13,043	3,711	0,330	14	12	13	16	24	11	13	13	12	12
	Total	481	8,742	1,551	0,229	14	12	13	16	24	11	13	13	12	11
S116*	Slovakia	12	8,152	2,702	0,214	14	12	13	16	24	11	13	13	12	11
	France	19	11,745	3,113	0,302	14	12	13	16	24	11	13	13	12	11
	Vaucluse	12	13,889	4,682	0,382	14	12	13	16	24	11	13	13	12	11
	Switzerland	16	11,096	2,276	0,285	14	12	13	16	24	11	13	13	12	11
	Denmark	6	5,737	2,133	0,160	14	12	13	16	24	11	13	13	11,5	11
	England	8	6,470	2,178	0,186	14	12	13,5	16	24	11	13	13	12	11
	Germany	22	10,211	2,123	0,259	14	12	13	16	24	11	13	13	12	11
	Ireland	14	6,370	1,449	0,169	14	12	13	16	24	11	13	13	12	11
	Italy	14	7,007	2,586	0,191	14	12	13	16	24	11	13	13	12	11
	Netherlands	6	10,024	2,416	0,273	14	12	13	16	24	11	13	13	12	11
	Total	146	9,485	1,990	0,246	14	12	13	16	24	11	13	13	12	11
U152	Greece	7	6,729	2,321	0,162	14	12	13	16	24	11	13	13	13	11
	Slovakia	7	9,317	4,486	0,195	14	12	13	16	24	11	13	13	11	11
	France	14	8,282	2,308	0,232	14	12	13	16	24	11	13	13	12	11
	Vaucluse	5	5,254	1,918	0,125	14	12	13	16	24	10	13	13	12	11
	Switzerland	29	6,577	1,776	0,177	14	12	13	16	24	11	13	13	12	11
	Romania	6	6,944	2,114	0,187	14	12	13	16	24	11	13	13	12,5	11
	Bashkir	8	All same hapotype			15	12	13	17	24	11	13	13	12	11
	England	9	8,454	2,281	0,228	14	12	13	16	24	11	13	13	12	11
	Germany	33	9,566	1,898	0,252	14	12	13	16	24	11	13	13	12	11
	Italy	57	7,769	1,339	0,198	14	12	13	16	24	11	13	13	12	11
	Poland	5	6,522	1,691	0,180	14	12	13	16	24	10	13	13	12	11
	Slovenia	6	8,454	2,053	0,233	14	12	13	16	24	11	13	13	12	11
	Total	206	8,244	1,376	0,218	14	12	13	16	24	11	13	13	12	11
M529 all	Denmark	7	9,231	3,943	0,199	14	12	13	16	24	11	13	13	12	11
	England	26	9,476	2,167	0,241	14	12	13	16	24	11	13	13	12	11
	France	7	9,317	2,536	0,248	14	12	13	16	24	11	13	13	12	11
	Germany	7	8,972	2,209	0,214	14	12	13	16	24	11	13	13	12	11
	Ireland	57	8,824	2,251	0,223	14	12	13	16	24	11	13	13	12	11
	Netherlands	5	5,797	1,449	0,150	14	12	13	16	24	11	13	13	12	11
	Sweden	7	6,729	1,553	0,186	14	12	13	16	24	11	13	13	12	11
	Total	129	8,691	1,649	0,223	14	12	13	16	24	11	13	13	12	11
M529*	Denmark	7	9,231	3,943	0,199	14	12	13	16	24	11	13	13	12	11
	England	20	8,514	1,911	0,226	14	12	13	16	24	11	13	13	12	11
	France	6	9,662	3,013	0,253	14	12	13	16	24	11	13	13	12	11
	Germany	6	7,790	2,050	0,200	14	12	13	16	24	11	13	13	12	11,5
	Ireland	41	8,081	2,160	0,219	14	12	13	16	24	11	13	13	12	11
	Netherlands	5	5,797	1,449	0,150	14	12	13	16	24	11	13	13	12	11
	Sweden	7	6,729	1,553	0,186	14	12	13	16	24	11	13	13	12	11
	Total	105	8,146	1,643	0,216	14	12	13	16	24	11	13	13	12	11
M222	England	6	3,321	1,455	0,090	14	12	13	16	25	11	14	13	12	11,5
	Ireland	16	3,865	1,584	0,095	14	12	13	16	25	11	14	13	12	11
	Total	24	3,800	1,217	0,095	14	12	13	16	25	11	14	13	12	11
M478/DYS390=19	Bashkir	10	0,362	0,362	0,010	14	12	14	16	19	10	13	13	13	10
	Total	14	1,553	1,105	0,044	14	12	14	16	19	10	13	13	13	10
M478/DYS390>19	Balkar	9	4,026	1,697	0,094	14	12	14	19	22	11	13	13	13	10
	Total	13	8,919	4,151	0,201	14	12	14	19	22	11	13	13	13	10
1. A single S116* haplotype from Vaucluse displayed DYS38II=20 whereas all other samples in this group displayed DYS389B=16. Excluding the
DYS389B=20 allele yielded a Td=9.058 +/- 2.882 kya and an average variance of 0.083.

Table 3 Estimated TMRCA of E1b1a UEP dates and distribution of E1b1a component haplogroups in sub-Saharan Africa

Источник: Evidence from Y-chromosome analysis for a late exclusively eastern expansion of the Bantu-speaking people. Pour 2013

Table 3 15 Y-STRs diversity of haplogroups C and O3 in East Asian populations

Источник: High frequencies of Y-chromosome haplogroup O2b-SRY465 lineages in Korea: a genetic perspective on the peopling of Korea. Kim 2011

Supplementary Table 4 Coalescence times for the Y chromosome haplogroups J1 (and subhaplogroups) and J2a2* in the Caucasus and neighboring regions/populations.

Источник: Таблица в формате EXCEL | The Caucasus as an Asymmetric Semipermeable Barrier to Ancient Human Migrations. Yunusbayev 2012

Additional file 3. Ages of the main Y-chromosome haplogroups in the samples of the present study together with relevant comparative data from Sengupta et al. Tharus, Indians, Hindus, Andhra Pradesh, Dravidian tribals, Tibeto-Burman tribals

Источник: Mitochondrial and Y-chromosome diversity of the Tharus (Nepal): a reservoir of genetic variation. Fornarino 2009

Additional file 3. Ages of the  main Y-chromosome haplogroups in the samples of the present study together with relevant comparative data from Sengupta et al.[15]
Haplogroup	N chrs	Variance	Age		σ	Reference
Population
H-69	60	0,601	26,8	+	6,0	present paper
H-69*	16	0,635	24,5	+	9,8	"              "
Indians pooled	29	0,727	30,4	+	7,7	Sengupta et al. [15]
H1-M52
Indians	15	0,253	10,2	+	3,9	"              "
Hindus	10	0,286	12,7	+	5,2	"              "
Indians pooled	144	0,271	10,6	+	1,8	Sengupta et al. [15]
H1a-M82*
Tharus	20	0,093	3,6	+	1,3	present paper
Tharus-C II	14	0,078	3,1	+	1,4	"              "
Indians	11	0,107	4	+	1,1	"              "
Hindus	6	0,110	4,5	+	1,6	"              "
Andhra Pradesh	5	0,093	3,4	+	1,5	"              "
H2-APT
Tharus-C II	9	0,286	12,6	+	6,5	present paper
Dravidian tribals	9	0,194	11,3	+	6,4	Sengupta et al. [15]
J2a-M410*
Tharus	17	0,346	14,3	+	4,9	present paper
Tharus-C I	6	0,133	4,8	+	2,3	"              "
Tharus-C II	6	0,240	9,7	+	3,3	"              "
Tharus-E	5	0,485	17,6	+	11,5	"              "
Indians pooled	26	0,339	14,3	+	3,0	Sengupta et al. [15]
J2b2-M241*
Tharus	7	0,437	18,3	+	6,2	present paper
Indians pooled	38	0,328	13,8	+	3,8	Sengupta et al. [15]
L1-M76
Tribals pooled	6	0,141	5,1	+	1,8	present paper
Dravidian tribals	10	0,168	6	+	2,4	Sengupta et al. [15]
Indians pooled	46	0,243	9,1	+	1,9	"              "
O3a3c-M134*
Tharus	57	0,247	9,7	+	2,8	present paper
Tibeto-Burman tribals	57	0,229	9,3	+	2,7	Sengupta et al. [15]
O3a3c1-M117
Tharus	55	0,136	5,5	+	2,1	present paper
Tharus-C I	28	0,108	4,7	+	2,1	"              "
Tharus-C II	22	0,145	5,8	+	2,4	"              "
Tharus-E	5	0,210	7,6	+	1,5	"              "
R1a1-M17*
Tharus	14	0,399	16,6	+	3,9	present paper
Tharus-C (I + II)	9	0,210	8,3	+	2,2	"              "
Tharus-E	5	0,500	20,3	+	9,1	"              "
Indians	42	0,450	17,6	+	3,8	"              "
Indians pooled	114	0,291	14	+	3,1	Sengupta et al.[15]
Hindus	34	0,310	14	+	4,1	present paper
Andhra Pradesh	8	0,988	37,7	+	21,5
R2-M124
Tharus	8	0,271	10,6	+	4,8	present paper
Tharus-C II	6	0,033	1,2	+	0,8	"              "
Indians	13	0,355	12,8	+	3,0	"              "
Indians pooled	68	0,284	11,6	+	2,1	Sengupta et al. [15]
Hindus	11	0,360	13,1	+	3,1	present paper